Stem-loop ppt-MIR1030h

Accession

MI0005982

Description

Physcomitrella patens ppt-MIR1030h precursor miRNA

Gene family

MIPF0000380; MIR1030

Sequence

gcuacguuaccuaUCUGCAUCUGCACCUGCACCGagauucgaagaguaaugaagaaucauauacgcaguugcagucauuuccaguucaucacuggaccugacaaauugaagcaaugaugcaauucucauucucgcuuaucggugcagugcuuaugcagauauguggcguug
...(((((((.(((((((((..((((.((((((((....(((.((((...(((..(((((.....(((((...((((..((((((.....))))))..)))).))))).....)))))....)))..)))))))....))))))))))))..))))))))).)))))))..

Structure

gcu       c         CU    C        gauu   a    aau   --ga     auacg     gca    uu      u 
   acguuac uaUCUGCAU  GCAC UGCACCGa    cga gagu   gaa    aucau     caguu   guca  uccagu c
   ||||||| |||||||||  |||| ||||||||    ||| ||||   |||    |||||     |||||   ||||  |||||| a
   ugcggug auagacgua  cgug acguggcu    gcu cuua   cuu    uagua     guuaa   cagu  agguca u
-gu       u         uu    -        auuc   -    -cu   aacg     acgaa     --a    cc      c 

Annotation confidence Not enough data

Genome context

Chr13: 13778496-13778666 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1030h

Mature ppt-miR1030h

• Accession: MIMAT0005130
• Description: Physcomitrella patens ppt-miR1030h mature miRNA
• Sequence: 14 - UCUGCAUCUGCACCUGCACCG - 34
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769