miRBase entry: ppt-MIR1030g

Stem-loop ppt-MIR1030g


Accession
MI0005981
Description
Physcomitrella patens ppt-MIR1030g precursor miRNA
Gene family
MIPF0000380; MIR1030


Sequence

ccccugcauuacugcuucaaugccacguaUCUGCAUCUGCACCUGCACCAaaguuucgaaaugcuaagcucuaaugugaaugaugacacuuuuuuuguacccaaagugggcaugaagcuguguguucugcuuggugaucguuucacaguuacgacucgauggugcggguucuuaugcagaaccguggcauuggagcaaucccuuuuaa
............(((((((((((((((..(((((((..(.((((((((((..(..(((.(((............((((((((((.(((.......))).((((...))))(((.((((.(......).)))).))))))).))))))))).)))..)..)))))))))).)..)))))))..)))))))))))))))...........

Structure
ccccugcauuac               ua       CU C          aa uu   a   gcuaagcucuaa      -    gacacuuuuuuuguacccaaaguggg   g    u ug 
            ugcuucaaugccacg  UCUGCAU  G ACCUGCACCA  g  ucg aau            ugugaa ugau                          cau aagc g  u
            |||||||||||||||  |||||||  | ||||||||||  |  ||| |||            |||||| ||||                          ||| |||| |   
            acgagguuacggugc  agacgua  c ugggcguggu  c  agc uug            acacuu gcua                          gug uucg c  g
-aauuuucccua               ca       uu u          ag uc   a   ------------      u    --------------------------   g    u uu 


Annotation confidence Not enough data
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Genome context
Chr10: 1725749-1725956 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR1030g

Accession MIMAT0005129
Description Physcomitrella patens ppt-miR1030g mature miRNA
Sequence 30 - UCUGCAUCUGCACCUGCACCA - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769