Stem-loop ppt-MIR1030e

Accession

MI0005979

Description

Physcomitrella patens ppt-MIR1030e precursor miRNA

Gene family

MIPF0000380; MIR1030

Sequence

gaaaauccuugaagcugcaacgcuacuuuUCUGCAUCUGCACCUGCACCAagaugcgauaacauguacagaugaaccaaauacacaguuguacugucaugcccaguuagccacuggacuugauuuguugaacaauuauuuguacucgcuuuaucgcguacuggugcagugccuaugcagacauguaguguuguagcuggaugcagauc
....((((....((((((((((((((...(((((((..((((.(((((((..(((((((((...(((((((((.............(((((((.((((.(.(((((.....))))).).))))..))...)))))))))))))).....)))))))))..)))))))))))..)))))))...)))))))))))))))))).......

Structure

---gaaa    uuga              uuu       CU    C       ag         --cau         aaccaaauacaca     ---  -u    u c     u 
       aucc    agcugcaacgcuac   UCUGCAU  GCAC UGCACCA  augcgauaa     guacagaug             guugu   ac  guca g ccagu a
       ||||    ||||||||||||||   |||||||  |||| |||||||  |||||||||     |||||||||             |||||   ||  |||| | ||||| g
       uagg    ucgauguugugaug   agacgua  cgug acguggu  ugcgcuauu     cauguuuau             uaaca   ug  uagu c gguca c
cuagacg    ----              uac       uc    -       ca         ucgcu         -------------     agu  uu    u a     c 

Annotation confidence Not enough data

Genome context

Chr03: 9993235-9993442 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1030e

Mature ppt-miR1030e

• Accession: MIMAT0005127
• Description: Physcomitrella patens ppt-miR1030e mature miRNA
• Sequence: 30 - UCUGCAUCUGCACCUGCACCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769