miRBase entry: ppt-MIR1030a

Stem-loop ppt-MIR1030a


Accession
MI0005975
Description
Physcomitrella patens ppt-MIR1030a precursor miRNA
Gene family
MIPF0000380; MIR1030


Sequence

aagguacgcaauuaaagcugcaccgucacauuUCUGCAUCUGCACCUGCACCAaaacgcgacuuugagguugugauggaauucugcagucacacccagccauuugcaagaguguucugccgguguuggauuguggcaauggauugcauucacaggcuuguguacuggugcagugcuuaugcagaaauguugcguuguagcucaaacuggauugag
........(((((..(((((((.(((.((((((((((((..((((.(((((((..((((......(((.((((((((.(((((....((((((.(((((.(((.(((.((....))))).))))))))..))))))...))))).)).)))))).)))))))..)))))))))))..)))))))))))).))).))))))).......)))))..

Structure
aagguacg     -----aa       c   c            CU    C       aa    gacuuu   g      -  g     ugca      -c     c   u   a  g 
        caauu       agcugca cgu acauuUCUGCAU  GCAC UGCACCA  acgc      gag uuguga ug aauuc    gucaca  ccagc auu gca ga u
        |||||       ||||||| ||| ||||||||||||  |||| |||||||  ||||      ||| |||||| || |||||    ||||||  ||||| ||| ||| ||  
        guuag       ucgaugu gcg uguaaagacgua  cgug acguggu  ugug      uuc gacacu ac uuagg    cggugu  gguug ugg cgu cu g
------ga     gucaaac       u   u            uu    -       ca    ------   g      u  g     -uaa      ua     -   c   -  u 


Annotation confidence Not enough data
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Genome context
Chr04: 17155934-17156148 [+]

Database links

Mature ppt-miR1030a

Accession MIMAT0005123
Description Physcomitrella patens ppt-miR1030a mature miRNA
Sequence 33 - UCUGCAUCUGCACCUGCACCA - 53
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769