Stem-loop ppt-MIR1028a

Accession

MI0005971

Description

Physcomitrella patens ppt-MIR1028a precursor miRNA

Literature search

1 open access papers mention ppt-MIR1028a
(1 sentences)

Sequence

acccgauuuaccuucacaucuguuccagcUCUUAGAUCUACAAUGUCACAugaacacauacuugguaacgaaucuggcaguaagacuucauuuauauggguccauuccgcuccaagcuuucacaucugugacagauuuagcaauauagugaaaaucugaccguuggugaugcaacugaagcaaguuuucacgUGACAUUGUAGAUCUACGUGCcggauuaguggugaaagccucaaguu
............(((((..(((.(((.((.(.(((((((((((((((((.((((.((...(((((..........(((.(...((((.(((....)))))))....).))))))))...((((....))))(((((((.((......))..)))))))...((((......))))........)).)))).))))))))))))))))).).)).))).)))..)))))...........

Structure

acccgauuuacc     au   u   a  U U                 A    c  ----------------------------------------------------------------aua     uaacgaaucu   a -uaa    u   u 
            uucac  cug ucc gc C UAGAUCUACAAUGUCAC ugaa ac                                                                   cuugg          ggc g    gacu cau u
            |||||  ||| ||| || | ||||||||||||||||| |||| ||                                                                   |||||          ||| |    |||| |||  
            aagug  gau agg CG G AUCUAGAUGUUACAGUg acuu ug                                                                   gaacc          ucg c    cugg gua a
-uugaacuccga     gu   u   c  U C                 c    u  aacgaagucaacguagugguugccagucuaaaagugauauaacgauuuagacagugucuacacuuuc     ----------   c uuac    -   u 

Annotation confidence Not enough data

Genome context

Chr21: 9417251-9417489 [-]

Mature ppt-miR1028a-5p

• Accession: MIMAT0005116
• Description: Physcomitrella patens ppt-miR1028a-5p mature miRNA
• Sequence: 30 - UCUUAGAUCUACAAUGUCACA - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1028a-3p

• Accession: MIMAT0005117
• Description: Physcomitrella patens ppt-miR1028a-3p mature miRNA
• Sequence: 193 - UGACAUUGUAGAUCUACGUGC - 213
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769