Stem-loop ppt-MIR1027a

Accession

MI0005969

Description

Physcomitrella patens ppt-MIR1027a precursor miRNA

Gene family

MIPF0000414; MIR1027

Sequence

gugcaagagcagauacuuaagucgaagagcaucUUUCUAUCUUCUCUUCCAAUCuauugaucugcccuuccaauacuaucagaucaauagauuggaagagcagaucgaaaaaugcucucaccuuaaggagagacagcgacuc
.(((....)))....((((((..((.((((((.((((.((((.(((((((((((((((((((((...............))))))))))))))))))))).)))).)))).))))))))..))))))...............

Structure

gugcaagagcagaua      uc  a      c    U    U                     cccuuc 
               cuuaag  ga gagcau UUUC AUCU CUCUUCCAAUCuauugaucug      c
               ||||||  || |||||| |||| |||| |||||||||||||||||||||      a
               gaauuc  cu cucgua aaag uaga gagaagguuagauaacuagac      a
cucagcgacagagag      ca  -      a    c    c                     uaucau 

Annotation confidence Not enough data

Genome context

Chr20: 8111018-8111159 [+]

Mature ppt-miR1027a

• Accession: MIMAT0005114
• Description: Physcomitrella patens ppt-miR1027a mature miRNA
• Sequence: 34 - UUUCUAUCUUCUCUUCCAAUC - 54
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769