miRBase entry: ppt-MIR1024a

Stem-loop ppt-MIR1024a


Accession
MI0005964
Description
Physcomitrella patens ppt-MIR1024a precursor miRNA
Gene family
MIPF0000406; MIR1024


Sequence

ggacgagaucgcggccgucaugaguuuugucgacgcccugcaauucaagcagacucgauuacaauguuugccgccgacgucacgcaugucacgugguuauuuguacuucagUCUGGUUGGAUUGUAGGCCUCcgcaaggcuucaugacucacucaacugcug
((.((......)).))((((((((((((((.((.(((.((((((((((.((((((.((.(((((.....(((((.(((((.....)))))..)))))...)))))..)))))))).))))))))))))).)).))))))).)))))))..............

Structure
ggacgagaucgcggcc       -       c  c   c          g      c  -u     uguuu     -c     c 
                gucauga guuuugu ga gcc ugcaauucaa cagacu ga  uacaa     gccgc  gacgu a
                ||||||| ||||||| || ||| |||||||||| |||||| ||  |||||     |||||  ||||| c
                caguacu cggaacg CU CGG AUGUUAGGUU GUCUga cu  auguu     uggug  cugua g
--gucgucaacucacu       u       c  C   -          G      -  uc     --uau     ca     c 


Annotation confidence Not enough data
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Genome context
Chr01: 15203931-15204092 [-]

Database links

Mature ppt-miR1024a

Accession MIMAT0005109
Description Physcomitrella patens ppt-miR1024a mature miRNA
Sequence 112 - UCUGGUUGGAUUGUAGGCCUC - 132
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769