Stem-loop ppt-MIR1023d

Accession

MI0005963

Description

Physcomitrella patens ppt-MIR1023d precursor miRNA

Gene family

MIPF0000396; MIR1023

Sequence

uguagaagaugcagcuugcagauuaucauCCACUCUCUCCGUUUCCCUUCCcacagcuaucauccggacuagcauuuccuguacauacuagggaagggaaauggagagaguguauaaugaauugcaugcuugauugcugag
..(((..(((..(((.(((((.((((.((.((((((((((((((((((((((..((.(((...(.(((........))).)...))))).)))))))))))))))))))))).)).)))).))))).)))..))).)))..

Structure

ug   aa   gc   u     a    c  C                      ac  c   cau c   cua 
  uag  gau  agc ugcag uuau au CACUCUCUCCGUUUCCCUUCCc  ag uau   c gga   g
  |||  |||  ||| ||||| |||| || ||||||||||||||||||||||  || |||   | |||    
  guc  uua  ucg acguu agua ua gugagagagguaaagggaaggg  uc aua   g ccu   c
ga   -g   gu   u     a    a  u                      -a  -   cau u   uua 

Annotation confidence Not enough data

Genome context

Chr14: 2643878-2644018 [-]

Mature ppt-miR1023d-5p

• Accession: MIMAT0005108
• Description: Physcomitrella patens ppt-miR1023d-5p mature miRNA
• Sequence: 30 - CCACUCUCUCCGUUUCCCUUCC - 51
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769