Stem-loop ppt-MIR1023c

Accession

MI0005962

Description

Physcomitrella patens ppt-MIR1023c precursor miRNA

Gene family

MIPF0000396; MIR1023

Sequence

gcgcaguuacacagcuugcauuucgguguCCACUCUCUCCGUUUCCCUUCCcaugauggcuagccuugaguaaguacauauguuuugaacacauguaugcuugcuuaaaauccuuugucggAGGGAAUCGGAAAGAGUGUACaaugaauugcaagcuugauugauucg
...((((((...((((((((.((((.(((.((((((.((((.((((((.((.((((.((......(((((((((((.((((((.......)))))).)))))))))))...)).)))).)))))))).)))).)))))).))).)))).)))))))))))))).....

Structure

--gcg      cac        u    g   C      C    U      U  c    u  cuagcc           c      uu 
     caguua   agcuugca uucg ugu CACUCU UCCG UUCCCU CC auga gg      uugaguaagua auaugu  u
     ||||||   |||||||| |||| ||| |||||| |||| |||||| || |||| ||      ||||||||||| ||||||  g
     guuagu   ucgaacgu aagu aCA GUGAGA AGGC AAGGGA gg uguu cc      aauucguucgu uguaca  a
gcuua      ---        u    a   U      A    U      -  c    u  ---uaa           a      ca 

Annotation confidence Not enough data

Genome context

Chr10: 3231102-3231269 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1023c

Mature ppt-miR1023c-5p

• Accession: MIMAT0005106
• Description: Physcomitrella patens ppt-miR1023c-5p mature miRNA
• Sequence: 30 - CCACUCUCUCCGUUUCCCUUCC - 51
• Evidence: experimental ; 454 [1]

Mature ppt-miR1023c-3p

• Accession: MIMAT0005107
• Description: Physcomitrella patens ppt-miR1023c-3p mature miRNA
• Sequence: 122 - AGGGAAUCGGAAAGAGUGUAC - 142
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769