Stem-loop ppt-MIR1223j

Accession

MI0005959

Description

Physcomitrella patens ppt-MIR1223j precursor miRNA

Gene family

MIPF0000383; MIR1223

Sequence

cccuucaacacaaggcugaagggucagcaagggugugugacucuacuaucugaacugugcgauuugauugccucguaaugaggcguacauaaagcuuuugaUUGUAGAGUCAUGCACCUCUAcugggccuucagucuaauuuuucugc
............((((((((((.((((...((((((((((((((((.(((.(((....((........((((((.....))))))........))))).))).))))))))))))))))...)))).))))))))))...........

Structure

cccuucaacaca          g    caa                u   u   cugu  gauuugau      g 
            aggcugaagg ucag   gggugugugacucuac auc gaa    gc        ugccuc u
            |||||||||| ||||   |||||||||||||||| ||| |||    ||        |||||| a
            ucugacuucc gguc   UCCACGUACUGAGAUG Uag uuu    cg        gcggag a
-cgucuuuuuaa          g    AUC                U   u   ----  aaauacau      u 

Annotation confidence Not enough data

Genome context

Chr05: 18717592-18717739 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR1223j

Mature ppt-miR1223j

• Accession: MIMAT0005101
• Description: Physcomitrella patens ppt-miR1223j mature miRNA
• Sequence: 102 - UUGUAGAGUCAUGCACCUCUA - 122
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769