Stem-loop ppt-MIR1223e

Accession

MI0005954

Description

Physcomitrella patens ppt-MIR1223e precursor miRNA

Gene family

MIPF0000383; MIR1223

Sequence

ugaccaugacaagcaauggagcuucgacaaggguguuugacucuacuacccgugaaccccaucagauggagauauguggUUGUAGAGUCAUGCACCUCUGccgaggcuccugcuuuuuacuccuuu
......(((.(((((..(((((((((.((.((((((.(((((((((.(((((((..(.((((...)))).).)))).))).))))))))).)))))).)).)))))))))))))).))).......

Structure

-ugacca   c     au         a  a      u         u   -    aa c    c 
       uga aagca  ggagcuucg ca gggugu ugacucuac acc cgug  c ccau  
       ||| |||||  ||||||||| || |||||| ||||||||| ||| ||||  | |||| a
       auu uucgu  ccucggagc GU UCCACG ACUGAGAUG Ugg guau  g ggua  
uuuccuc   u     --         c  C      U         U   u    -a a    g 

Annotation confidence Not enough data

Genome context

Chr25: 8370886-8371011 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1223e

Mature ppt-miR1223e

• Accession: MIMAT0005096
• Description: Physcomitrella patens ppt-miR1223e mature miRNA
• Sequence: 80 - UUGUAGAGUCAUGCACCUCUG - 100
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769