Stem-loop ppt-MIR1223d

Accession

MI0005953

Description

Physcomitrella patens ppt-MIR1223d precursor miRNA

Gene family

MIPF0000383; MIR1223

Sequence

gcggcgauggauacuagacucgaggucgaacaagggugugugacccuacaauccgaaacgcgagacuuaaugcuucgccugcgaUUGUAGAGUCAUACACCUCUgcuagccuuccggucuuccgcucuaagcua
((...((((((....(((((.(((((....((.(((((((((((.((((((((.(....(((((.(.....).)))))...))))))))).))))))))))).))...)))))..))))))))).))...))..

Structure

--  ggc  -    uacu     -c     cgaa  a           c        c aaac     a u 
  gc   ga ugga    agacu  gaggu    ca gggugugugac cuacaauc g    gcgag c u
  ||   || ||||    |||||  |||||    || ||||||||||| |||||||| |    ||||| | a
  cg   cu gccu    ucugg  uuccg    gU UCCACAUACUG GAUGUUag c    cgcuu g a
au  aau  c    ----     cc     -auc  C           A        - -guc     c u 

Annotation confidence Not enough data

Genome context

Chr16: 14296041-14296174 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1223d

Mature ppt-miR1223d

• Accession: MIMAT0005095
• Description: Physcomitrella patens ppt-miR1223d mature miRNA
• Sequence: 85 - UUGUAGAGUCAUACACCUCU - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769