Stem-loop ppt-MIR1223c

Accession

MI0005952

Description

Physcomitrella patens ppt-MIR1223c precursor miRNA

Gene family

MIPF0000383; MIR1223

Sequence

agguucacucuauucaagguuggauugucagcaaaggugugcgacucuauaauccaaagcuugugggaggaauucaccucgccugugaccgaUUGUAGAGUCAUACACCUCUAcugaccuuccagucucuuugcucacagcuu
................((((((((..(((((...(((((((.((((((((((((....((..(((((..(....)..)))))..))....)))))))))))).)))))))...)))))..))))))))....(((...)))..

Structure

agguucacucuauuca        uu     caa       c            caaa  uu     ag a 
                agguugga  gucag   aggugug gacucuauaauc    gc  guggg  g a
                ||||||||  |||||   ||||||| ||||||||||||    ||  |||||  |  
                ucugaccu  caguc   UCCACAU CUGAGAUGUUag    ug  cgcuc  c u
-uucgacacucguuuc        uc     AUC       A            ccag  uc     ca u 

Annotation confidence Not enough data

Genome context

Chr06: 2754144-2754286 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR1223c

Mature ppt-miR1223c

• Accession: MIMAT0005094
• Description: Physcomitrella patens ppt-miR1223c mature miRNA
• Sequence: 93 - UUGUAGAGUCAUACACCUCUA - 113
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769