Stem-loop ppt-MIR1222e

Accession

MI0005950

Description

Physcomitrella patens ppt-MIR1222e precursor miRNA

Gene family

MIPF0000410; MIR1222

Sequence

aguugaaugugugcgguuguggggauauugacgugcuggugagcuccuucaagcucgagugugcgucuugccacggccUUGAAGGAGUUCAGUGGUACAucaauguccauggcauacucaaggcgggac
.(((....((((((.((.....(((((((((.((((((.((((((((((((((((...(((.((.....))))))).)))))))))))))).)))))).))))))))))).))))))....))).....

Structure

----a   gaau      g  ugugg         c      g              -  cga   u  g 
     guu    gugugc gu     ggauauuga gugcug ugagcuccuucaag cu   gug gc u
     |||    |||||| ||     ||||||||| |||||| |||||||||||||| ||   ||| || c
     cgg    cauacg ua     ccuguaacu CAUGGU ACUUGAGGAAGUUc gg   cac cg u
caggg   aacu      g  -----         A      G              c  ---   -  u 

Annotation confidence Not enough data

Genome context

Chr10: 12476527-12476655 [+]

Mature ppt-miR1222e

• Accession: MIMAT0005092
• Description: Physcomitrella patens ppt-miR1222e mature miRNA
• Sequence: 79 - UUGAAGGAGUUCAGUGGUACA - 99
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769