miRBase entry: ppt-MIR1222d

Stem-loop ppt-MIR1222d


Accession
MI0005949
Description
Physcomitrella patens ppt-MIR1222d precursor miRNA
Gene family
MIPF0000410; MIR1222


Sequence

cugauguuguuauuauuguuacgggcauucgugugcuggugaacuccuucaugcacaagugcggcucuucgcgcaccagcUUUAAGGGGUUCACUGGUAUAugaaugcacauggcaugaucugaucacggg
(((.((.....(((((.((((.(.(((((((((((((((((((((((((...((....(((((........)))))..))...))))))))))))))))))))))))).).))))))))).....))))).

Structure
-   a  uuguu     u    c g                         cau  acaa     gcu 
 cug ug     auuau guua g gcauucgugugcuggugaacuccuu   gc    gugcg   c
 ||| ||     ||||| |||| | |||||||||||||||||||||||||   ||    |||||    
 ggc ac     uagua cggu c cguaaguAUAUGGUCACUUGGGGAA   cg    cacgc   u
g   -  uaguc     -    a a                         UUU  --ac     gcu 


Annotation confidence Not enough data
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Genome context
Chr14: 5466061-5466191 [-]

Database links

Mature ppt-miR1222d

Accession MIMAT0005091
Description Physcomitrella patens ppt-miR1222d mature miRNA
Sequence 81 - UUUAAGGGGUUCACUGGUAUA - 101
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769