Stem-loop ppt-MIR1222b

Accession

MI0005947

Description

Physcomitrella patens ppt-MIR1222b precursor miRNA

Gene family

MIPF0000410; MIR1222

Sequence

gugcgucgaugcaacugcucuaaucauuuucguaccaguguauuccuucaaaccucuucucuugacuguagugguggcCUGAAGGAGUUCAUUGGUACAcaaaucuugagagcauggaggaaaauaga
.(((......)))..((((((....((((..(((((((((.(((((((((..((.((.(((......).)).)).))..))))))))).)))))))))..))))....))))))..............

Structure

gugcgucgaugcaac      aauc    uc         u         aa  u  u  - uu 
               ugcucu    auuu  guaccagug auuccuuca  cc cu cu c  g
               ||||||    ||||  ||||||||| |||||||||  || || || |   
               acgaga    uaaa  CAUGGUUAC UGAGGAAGU  gg gg ga g  a
-agauaaaaggaggu      guuc    cA         U         Cc  u  u  u uc 

Annotation confidence Not enough data

Genome context

Chr15: 1335912-1336039 [-]

Mature ppt-miR1222b

• Accession: MIMAT0005089
• Description: Physcomitrella patens ppt-miR1222b mature miRNA
• Sequence: 79 - CUGAAGGAGUUCAUUGGUACA - 99
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769