miRBase entry: ppt-MIR902l

Stem-loop ppt-MIR902l


Accession
MI0005946
Description
Physcomitrella patens ppt-MIR902l precursor miRNA
Gene family
MIPF0000376; MIR902

Literature search
2 open access papers mention ppt-MIR902l
(2 sentences)

Sequence

auuagcaacugcugcacugguuaucucucucgucUAUGUUGCAGAUUCUUCAUUUgcaaaacugaucauagaaguuaagugaaAGAAGGAUCUGCAACAUAUACaagaacggauaaucggaugugaugaugagc
...(((....)))(((((((((((((.(((.((.(((((((((((((((((.(((((..((((.........))))..))))).))))))))))))))))).)).)))..)))))))))).)))..........

Structure
auuagcaacugcu   -          -c   c  c                 A     aa    gau 
             gca cugguuaucu  ucu gu UAUGUUGCAGAUUCUUC UUUgc  aacu   c
             ||| ||||||||||  ||| || ||||||||||||||||| |||||  ||||   a
             ugu ggcuaauagg  aga CA AUACAACGUCUAGGAAG aagug  uuga   u
---cgaguaguag   a          ca   a  U                 A     aa    aga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr26: 6398753-6398886 [+]

Database links

Mature ppt-miR902l-5p

Accession MIMAT0005087
Description Physcomitrella patens ppt-miR902l-5p mature miRNA
Sequence 35 - UAUGUUGCAGAUUCUUCAUUU - 55
Evidence experimental
454 [1]

Mature ppt-miR902l-3p

Accession MIMAT0005088
Description Physcomitrella patens ppt-miR902l-3p mature miRNA
Sequence 84 - AGAAGGAUCUGCAACAUAUAC - 104
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769