miRBase entry: ppt-MIR902e

Stem-loop ppt-MIR902e


Accession
MI0005939
Description
Physcomitrella patens ppt-MIR902e precursor miRNA
Gene family
MIPF0000376; MIR902

Literature search
2 open access papers mention ppt-MIR902e
(2 sentences)

Sequence

gacagcgugccgucucauuuccuuccgcuagucUAUGAUGCAGAUUCUUCAUCUguuucgugugaugcuugugcacgagucagACGAAGGUCUGCAUCAUAGUcaagaggaagcaaauaugaaauucaggagc
.....(.((...((..((((.(((((.((.(.(((((((((((((.((((.((((.((((((((.......)))))))).)))).))))))))))))))))).).)).))))).))))..))....)).)...

Structure
gacag g  -ccg  uc    c     g  a u             U    A    u        au 
     c ug    uc  auuu cuucc cu g cUAUGAUGCAGAU CUUC UCUg uucgugug  g
     | ||    ||  |||| ||||| || | ||||||||||||| |||| |||| ||||||||  c
     g ac    ag  uaaa gaagg ga c GAUACUACGUCUG GAAG Agac gagcacgu  u
--cga g  uuaa  ua    c     a  a U             -    C    u        gu 


Annotation confidence Not enough data
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Genome context
Chr11: 9177888-9178020 [+]

Database links

Mature ppt-miR902e-5p

Accession MIMAT0005073
Description Physcomitrella patens ppt-miR902e-5p mature miRNA
Sequence 34 - UAUGAUGCAGAUUCUUCAUCU - 54
Evidence experimental
454 [1]

Mature ppt-miR902e-3p

Accession MIMAT0005074
Description Physcomitrella patens ppt-miR902e-3p mature miRNA
Sequence 84 - ACGAAGGUCUGCAUCAUAGU - 103
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769