Stem-loop ppt-MIR902c

Accession

MI0005937

Description

Physcomitrella patens ppt-MIR902c precursor miRNA

Gene family

MIPF0000376; MIR902

Literature search

2 open access papers mention ppt-MIR902c
(2 sentences)

Sequence

ucuauuggcguaugcucauuuccuccuucuagcgUAUGAUGCAGAUUCUUCAUCUguugaacugaauuuuucuuagugaugcagACGAAGGUCUGCAUCAUAGUcaagggggaggaaauauauaucaugauucu
......(((....))).(((((((((((((.(..((((((((((((.((((.(((((...(((((.......)))))...))))).))))))))))))))))..).)))))))))))))...............

Structure

ucuauuggcguaugcuc             a cg            U    A     uga     au 
                 auuuccuccuucu g  UAUGAUGCAGAU CUUC UCUgu   acuga  u
                 ||||||||||||| |  |||||||||||| |||| |||||   |||||  u
                 uaaaggaggggga c  AUACUACGUCUG GAAG Agacg   ugauu  u
--ucuuaguacuauaua             a UG            -    C     uag     cu 

Annotation confidence Not enough data

Genome context

Chr21: 13954620-13954753 [-]

Mature ppt-miR902c-5p

• Accession: MIMAT0005069
• Description: Physcomitrella patens ppt-miR902c-5p mature miRNA
• Sequence: 35 - UAUGAUGCAGAUUCUUCAUCU - 55
• Evidence: experimental ; 454 [1]

Mature ppt-miR902c-3p

• Accession: MIMAT0005070
• Description: Physcomitrella patens ppt-miR902c-3p mature miRNA
• Sequence: 85 - ACGAAGGUCUGCAUCAUAGU - 104
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769