miRBase entry: ppt-MIR537c

Stem-loop ppt-MIR537c


Accession
MI0005935
Description
Physcomitrella patens ppt-MIR537c precursor miRNA
Gene family
MIPF0000207; MIR537

Literature search
1 open access papers mention ppt-MIR537c
(1 sentences)

Sequence

ucauaucuggacuguagaaacaccugaagugacugaaguuaguccgguuuagguaugagaaugauuggagcaccucuccagauguuccagauguaaugaaaccggugcaagcuucaagcucUUGAGGUGUUUCUACAGGCUAcauauga
((((((.(((.((((((((((((((.(((.(..(((((((.((((((((((.((.((.(((((.((((((.....)))))).))))))).)).))....)))))).)).)))))))..).))).)))))))))))))).))).))))))

Structure
      c   a              g   u ac       a  -      ----  g  a  a     a      c 
ucauau ugg cuguagaaacaccu aag g  ugaaguu gu ccgguu    ua gu ug gaaug uuggag a
|||||| ||| |||||||||||||| ||| |  ||||||| || ||||||    || || || ||||| |||||| c
aguaua AUC GACAUCUUUGUGGA UUc c  acuucga cg ggccaa    au ua ac cuugu gaccuc c
      c   G              G   u ga       a  u      agua  g  g  -     a      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ppt-miR537c

Accession MIMAT0005067
Description Physcomitrella patens ppt-miR537c mature miRNA
Sequence 122 - UUGAGGUGUUUCUACAGGCUA - 142
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769