Accession
MI0005933
Description
Physcomitrella patens
ppt-MIR536e precursor miRNA
Gene family
MIPF0000398;
MIR536
Literature search
2 open access papers mention ppt-MIR536e
(16 sentences)
(16 sentences)
Sequence
uguguggauccuaagugucuccccuuggaagccgcaguuuggcaugaagcacuuauuccuuugcgcauccauuuugugacugcuuguauugagucgaauccaauuccuugccuucuacuuccuuccaaucuagaucacuccugguuuuucacauuguuugguuguugggggucauauuguuuguauaccuuuuuucgcacgaaaucuucaauuugaaagacgcuguuggaaacucuaauuucgaauuucugcagccacacccaauaguuugaggucuugucgguaucuuccuuugcgcgccuacuucagugacugcagaaagucacugcagucacuaccggggacgaacauacuagcacuguuaaucucacuauacucgucaaucuucaguuguccaugcacgauuucucccuaaaauuauugaggggauaucagaguUUCGUGCCAAGCUGUGUGCAACcaag
.....(((..(.....)..))).(((((..((((((((((((((((((((.((((((((((((((((........(((((((.(((....((((.(((..(((....)))..))).)))).....)))..))).)))).....((((((((.((((((((((....((((((.((((.....))))))))))....)).)))).....)))).))))))))(((((.(((((.((.......)).))))))))))...((((((....))).)))......((......))..))))).........(((((((((((.......)))))))))))...((((((((.............................))))).......((((((......))))))...)))..........)))))))))..)).)))))))))))))))))).))..)))))
.....(((..(.....)..))).(((((..((((((((((((((((((((.((((((((((((((((........(((((((.(((....((((.(((..(((....)))..))).)))).....)))..))).)))).....((((((((.((((((((((....((((((.((((.....))))))))))....)).)))).....)))).))))))))(((((.(((((.((.......)).))))))))))...((((((....))).)))......((......))..))))).........(((((((((((.......)))))))))))...((((((((.............................))))).......((((((......))))))...)))..........)))))))))..)).)))))))))))))))))).))..)))))
Structure
uguguggauccuaagugucuccc aa - a -- ---------------------------------------------------------------------------------------------------------------------------- uccauuuugugacugcuuguauugagucgaauccaauuccuugccuucuacuuccuuccaaucuagaucacuccug c ----- - uguu c u
cuugg gc cgcaguuuggcaugaagc cu uauuccuuu gcgca guuuuuca auug uuug gu gggggu auau g
||||| || |||||||||||||||||| || ||||||||| ||||| |||||||| |||| |||| || |||||| |||| u
gaacC CG GUGUCGAACCGUGCUUug ga auaggggag cgcgu cagaaagu uaac aagc cg uuucca uaug u
----------------------- AA U a cu uuauuaaaaucccucuuuagcacguaccuguugacuucuaacugcucauaucacucuaauugucacgaucauacaagcaggggccaucacugacgucacugaaagacgucagugacuucauccg ----uuccuucuauggcuguucuggaguuugauaacccacaccgacgucuuuaagcuuuaaucucaaagguugucg u uucua a cuuu - u
Annotation confidence
Not enough data
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Genome context
Chr23: 1247525-1247988 [+]
Database links
Mature ppt-miR536e
| Accession | MIMAT0005065 |
| Description | Physcomitrella patens ppt-miR536e mature miRNA |
| Sequence | 439 - UUCGUGCCAAGCUGUGUGCAAC - 460 |
| Evidence |
experimental
454 [1] |
References
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