miRBase entry: ppt-MIR533e

Stem-loop ppt-MIR533e


Accession
MI0005930
Description
Physcomitrella patens ppt-MIR533e precursor miRNA
Gene family
MIPF0000356; MIR533


Sequence

gagugguugugcaugacgaggcagcgacagagagagcuggccagacugugagggauggagcgaauuuagcuugugccuuguguggcucacucgugcagcuccCUCACAGUCUGCAUGGCUCUCcgugucucuuccucuuuucggccacguugg
..(((((((.....((.((((.((.((((..((((((((..((((((((((((((.(..(((.....((..((.(((......))).))))..)))..)))))))))))))))..))))))))..)))).)).))))))..))))))).....

Structure
---ga       ugcau  c    c  c    ga        gc              u ga   aauuu  cu  u   uu 
     gugguug     ga gagg ag gaca  gagagcug  cagacugugaggga g  gcg     ag  ug gcc  g
     |||||||     || |||| || ||||  ||||||||  |||||||||||||| |  |||     ||  || |||   
     caccggc     uu cucc uc cugu  CUCUCGGU  GUCUGACACUCccu c  cgu     uc  ac cgg  u
gguug       ---uu  -    u  u    gc        AC              - ga   ---gc  --  u   ug 


Annotation confidence Not enough data
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Genome context
Chr15: 13275772-13275924 [-]

Database links

Mature ppt-miR533e

Accession MIMAT0005063
Description Physcomitrella patens ppt-miR533e mature miRNA
Sequence 103 - CUCACAGUCUGCAUGGCUCUC - 123
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769