Stem-loop ppt-MIR533d

Accession

MI0005929

Description

Physcomitrella patens ppt-MIR533d precursor miRNA

Gene family

MIPF0000356; MIR533

Sequence

cagcaucagcucaggggcaguagcauggagagcuguucagacucugagagagggguguggaaaacauguacuguuguaucgacacucgucgCUCACAGUCUGCACAGCUCUCuguguugcucccucuaauugacuuca
.(((....))).(((((.((((((((((((((((((.((((((.((((.((.((((((.((..(((........))).)).)))))).)).)))).)))))).)))))))))))))))))).)))))...........

Structure

cagcaucagcuc     c                  u      c    a  g      g  aa   ugu 
            agggg aguagcauggagagcugu cagacu ugag ga gggugu ga  aca   a
            ||||| |||||||||||||||||| |||||| |||| || |||||| ||  |||    
            ucucc ucguuguguCUCUCGACA GUCUGA ACUC cu cucaca cu  ugu   c
-acuucaguuaa     c                  C      C    g  g      g  -a   ugu 

Annotation confidence Not enough data

Genome context

Chr18: 6390979-6391116 [+]

Mature ppt-miR533d

• Accession: MIMAT0005062
• Description: Physcomitrella patens ppt-miR533d mature miRNA
• Sequence: 92 - CUCACAGUCUGCACAGCUCUC - 112
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769