Stem-loop ppt-MIR529f

Accession

MI0005926

Description

Physcomitrella patens ppt-MIR529f precursor miRNA

Gene family

MIPF0000388; MIR529

Literature search

2 open access papers mention ppt-MIR529f
(3 sentences)

Sequence

ugcacaauuuucucacucaugcugggaucAGAAGAGAGAGAGUACAGCCCaacggccgauguucaguuggaacgggcugugcucucucucuucuuguuccaaccugggugcauuuccguucu
.............((((((.(.((((((.(((((((((((((((((((((.....(((((.....)))))...))))))))))))))))))))).)))))).).))))))............

Structure

ugcacaauuuucu      u c      c                     aacgg     g 
             cacuca g ugggau AGAAGAGAGAGAGUACAGCCC     ccgau u
             |||||| | |||||| |||||||||||||||||||||     ||||| u
             gugggu c accuug ucuucucucucucgugucggg     gguug c
-ucuugccuuuac      c a      u                     --caa     a 

Annotation confidence Not enough data

Genome context

Chr24: 1643882-1644003 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR529f

Mature ppt-miR529f

• Accession: MIMAT0005059
• Description: Physcomitrella patens ppt-miR529f mature miRNA
• Sequence: 30 - AGAAGAGAGAGAGUACAGCCC - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769