miRBase entry: ppt-MIR477h

Stem-loop ppt-MIR477h


Accession
MI0005920
Description
Physcomitrella patens ppt-MIR477h precursor miRNA
Gene family
MIPF0000216; MIR477

Literature search
1 open access papers mention ppt-MIR477h
(11 sentences)

Sequence

ucagagggaguauacucagguguuuguuuuUCUCCCUCAAAGGCUUCCAacuacaucagcauucuauuccacuucuggcuuaagaugcagugaauuugcguuguuguuggaugccuuagugggagauguacauaccccugucauugauguguugc
...(((........)))(((.((.(((...((((((.(.(((((.((((((.(((((((((((.((..(((....)))..)).)))))..)))........))).)))))).))))).).))))))...))).)).)))................

Structure
ucagagggaguauacuc   u  u   uuu      U A     U      u   --------   --     c  uu   c 
                 agg gu ugu   UCUCCC C AAGGC UCCAac aca        uca  gcauu ua  cca u
                 ||| || |||   |||||| | ||||| |||||| |||        |||  ||||| ||  |||  
                 ucc ca aca   agaggg g uuccg agguug ugu        agu  cguag au  ggu u
-cguuguguaguuacug   c  u   ugu      u a     u      u   ugcguuua   ga     a  uc   c 


Annotation confidence Not enough data
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Genome context
Chr21: 3739666-3739820 [+]

Database links

Mature ppt-miR477h

Accession MIMAT0005053
Description Physcomitrella patens ppt-miR477h mature miRNA
Sequence 31 - UCUCCCUCAAAGGCUUCCA - 49
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769