Stem-loop ppt-MIR477d

Accession

MI0005918

Description

Physcomitrella patens ppt-MIR477d precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention ppt-MIR477d
(11 sentences)

Sequence

guugauuucgauuaaacagauugcuuguucCUCUCCCUCAAAGGCUUCCAacaacagguacuuggucuuguuuucaccagcaaagcuaaggcccgucccagauguuagaagccucugggggugacgaagcagcagcuguaugggugguucccau
...............((((.(((((..(((.((.((((((.(((((((.((((.(.((.((..((((((((((((....).))))).)))))).)).)).).)))).))))))).)))))).)).)))..)))))))))(((((.....)))))

Structure

guugauuucgauuaa    a     ug   C  U      A       C    a a  u  uu      -     - a 
               acag uugcu  uuc UC CCCUCA AGGCUUC Aaca c gg ac  ggucuu guuuu c c
               |||| |||||  ||| || |||||| ||||||| |||| | || ||  |||||| ||||| |  
               uguc gacga  aag ag gggggu uccgaag uugu g cc ug  ccggaa cgaaa g c
uacccuuggugggua    -     cg   c  u      c       a    a a  c  -c      u     c a 

Annotation confidence Not enough data

Genome context

Chr02: 13760290-13760443 [+]

Mature ppt-miR477d

• Accession: MIMAT0005051
• Description: Physcomitrella patens ppt-miR477d mature miRNA
• Sequence: 31 - CUCUCCCUCAAAGGCUUCCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769