Stem-loop ppt-MIR166k

Accession

MI0005914

Description

Physcomitrella patens ppt-MIR166k precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention ppt-MIR166k
(5 sentences)

Sequence

gaagaugcuggaugugccuuugccgugaggaaugacguauggcccgaagcuaucucuuggauggccuugaugaagcUCCGGACCAGGCUUCAUUCCCcucggcggaguugcaaauguggacac
.....(((((.((.(((((((((((.(.(((((((.((.(((.(((.((((.((((..((....))..)).)))))).))).))).)).))))))).).))))))))..))).)).))).)).

Structure

gaaga  -   g  g   --        u a       c  a   c   a    a  -  uu  a 
     ug cug au ugc  cuuugccg g ggaauga gu ugg ccg agcu uc uc  gg u
     || ||| || |||  |||||||| | ||||||| || ||| ||| |||| || ||  ||  
     ac ggu ua acg  gaggcggc c CCUUACU CG ACC GGC Ucga ag ag  cc g
----c  a   g  a   uu        u C       U  G   A   C    -  u  uu  g 

Annotation confidence Not enough data

Genome context

Chr27: 682470-682592 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR166k

Mature ppt-miR166k

• Accession: MIMAT0005047
• Description: Physcomitrella patens ppt-miR166k mature miRNA
• Sequence: 77 - UCCGGACCAGGCUUCAUUCCC - 97
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769