miRBase entry: ppt-MIR166g

Stem-loop ppt-MIR166g


Accession
MI0005910
Description
Physcomitrella patens ppt-MIR166g precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ppt-MIR166g
(5 sentences)

Sequence

gugcggagguguuuaggugaaacucugcugcgaggaaugcccccuggcccgaaggcauguacuucucccucuucgaauggugugagcaucaagcuUCGGACCAGGCUUCAUUCCCCucagcgcaguuacauuucgauauucacguc
..(((..((((((.(((((.((((.(((((.(.((((((...(((((.((((((.(.((...(((.(((.........)).).)))...)).))))))).)))))...)))))).).))))).)))).))))).))))))..))).

Structure
gu   ga      u     a    c     c a      ccc     c      g a  uac   u -  ucu 
  gcg  gguguu aggug aacu ugcug g ggaaug   ccugg ccgaag c ug   uuc c cc   u
  |||  |||||| ||||| |||| ||||| | ||||||   ||||| |||||| | ||   ||| | ||   c
  ugc  uuauag uuuac uuga gcgac C CCUUAC   GGACC GGCUuc g ac   gag g gg   g
-c   ac      c     a    c     u C      UUC     A      - a  uac   u u  uaa 


Annotation confidence Not enough data
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Genome context
Chr01: 18416230-18416375 [+]

Database links

Mature ppt-miR166g

Accession MIMAT0005043
Description Physcomitrella patens ppt-miR166g mature miRNA
Sequence 96 - UCGGACCAGGCUUCAUUCCCC - 116
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769