miRBase entry: ppt-MIR166f

Stem-loop ppt-MIR166f


Accession
MI0005909
Description
Physcomitrella patens ppt-MIR166f precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention ppt-MIR166f
(5 sentences)

Sequence

augaccagcauaccaguggugcugugcugggaggaaugcugcauggucugaugcuuuugcugcgacacaagccUCGGACCAGGCUUCAUUCCCCucagcucagucucauauugacgguucaag
..((((..((.....((((.((((.((((((.((((((..((.((((((((.((((.((......)).)))).)))))))).))..)))))).)))))).)))).))))..))..))))....

Structure
--au    ag  uacca    u    u      a      cu  a        u    u  cu 
    gacc  ca     gugg gcug gcuggg ggaaug  gc uggucuga gcuu ug  g
    ||||  ||     |||| |||| |||||| ||||||  || |||||||| |||| ||   
    uugg  gu     uacu ugac cgacuC CCUUAC  CG ACCAGGCU cgaa ac  c
gaac    ca  ---ua    c    u      C      UU  G        c    c  ag 


Annotation confidence Not enough data
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Genome context
Chr06: 13228484-13228606 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR166f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR166f

Accession MIMAT0005042
Description Physcomitrella patens ppt-miR166f mature miRNA
Sequence 74 - UCGGACCAGGCUUCAUUCCCC - 94
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769