Stem-loop sequence dme-mir-1016

Accession

MI0005877 (change log)

Description

Drosophila melanogaster miR-1016 stem-loop

Stem-loop

   g       a      au    ---    ua 
5'  uaaguau gagagg  guga   uugg  a
    ||||||| ||||||  ||||   ||||   
3'  auucaua cucucu  cacu   aacc  a
   g       c      -c    uga    uu 

Deep sequencing

241 reads, 0 reads per million, 39 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 14233130-14233187 [-]
• Overlapping transcripts:

  sense

  FBtr0087573 ; opa1-like-RB; intron 6

  FBtr0087574 ; opa1-like-RA; intron 7

Database links

• RNAcentral:URS000078CF5C_7227
• miRBase Tracker:MI0005877

Mature sequence dme-miR-1016-5p

• Accession: MIMAT0020908
• Sequence: 2 - uaaguauagagaggauguga - 21
• Deep sequencing: 176 reads, 30 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000059F746_7227

Mature sequence dme-miR-1016-3p

• Accession: MIMAT0005029
• Previous IDs: dme-miR-1016
• Sequence: 38 - uucaccucucuccauacuuag - 58
• Deep sequencing: 63 reads, 17 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000014FAFC_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1016
  • microrna.org:dme-miR-1016-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).