Stem-loop sequence dme-mir-1013

Accession

MI0005874 (change log)

Description

Drosophila melanogaster miR-1013 stem-loop

Gene family

MIPF0000985; mir-1013

Literature search

1 open access papers mention dme-mir-1013
(1 sentences)

Stem-loop

   --        c   c    -a      a  a 
5'   gugaguuu gua acuu  auuaau gg u
     |||||||| ||| ||||  |||||| || c
3'   cgcucaag cgu ugaa  uaauug cc g
   ga        c   a    aa      -  g 

Deep sequencing

2394 reads, 2.04 reads per million, 49 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 30791636-30791696 [-]
• Overlapping transcripts:

  sense

  FBtr0085720 ; wts-RA; intron 6

Database links

• RNAcentral:URS00007B61CF_7227
• miRBase Tracker:MI0005874

Mature sequence dme-miR-1013-3p

• Accession: MIMAT0005026
• Previous IDs: dme-miR-1013
• Sequence: 39 - auaaaaguaugccgaacucg - 58
• Deep sequencing: 2363 reads, 49 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00004B5AA8_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1013
  • microrna.org:dme-miR-1013-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).