Stem-loop sequence dme-mir-1012

Accession

MI0005873 (change log)

Description

Drosophila melanogaster miR-1012 stem-loop

Gene family

MIPF0001046; mir-1012

Literature search

3 open access papers mention dme-mir-1012
(5 sentences)

Stem-loop

   --     u    -              gcu 
5'   guggg agaa cuuugauuaauauu   u
     ||||| |||| ||||||||||||||    
3'   uaccc uuuu gaaacugauuauaa   g
   ga     c    a              aaa 

Deep sequencing

39804 reads, 222 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 26861349-26861407 [-]
• Overlapping transcripts:

  sense

  FBtr0085097 ; Lerp-RB; intron 6

  FBtr0085099 ; Lerp-RA; intron 6

  FBtr0300939 ; Lerp-RD; intron 6

Database links

• RNAcentral:URS00007B26C4_7227
• miRBase Tracker:MI0005873

Mature sequence dme-miR-1012-5p

• Accession: MIMAT0020906
• Sequence: 2 - uggguagaacuuugauuaaua - 22
• Deep sequencing: 27788 reads, 49 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000020C449_7227

Mature sequence dme-miR-1012-3p

• Accession: MIMAT0005025
• Previous IDs: dme-miR-1012
• Sequence: 37 - uuagucaaagauuuuccccauag - 59
• Deep sequencing: 12016 reads, 49 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00005AD8FB_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1012
  • microrna.org:dme-miR-1012-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).