Stem-loop sequence dme-mir-1011

Accession

MI0005872 (change log)

Description

Drosophila melanogaster miR-1011 stem-loop

Gene family

MIPF0000969; mir-1011

Literature search

1 open access papers mention dme-mir-1011
(1 sentences)

Stem-loop

   --      -u          g    ua 
5'   gugagu  uuugagccag aaua  g
     ||||||  |||||||||| ||||  u
3'   cgcucg  aaacuugguu uuau  u
   ga      cu          a    uc 

Deep sequencing

169 reads, 0 reads per million, 29 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 20853305-20853358 [-]
• Overlapping transcripts:

  sense

  FBtr0299719 ; Ir93a-RB; intron 2

  FBtr0299720 ; Ir93a-RC; intron 4

  FBtr0299718 ; Ir93a-RA; intron 7

Database links

• RNAcentral:URS000079C1D2_7227
• miRBase Tracker:MI0005872

Mature sequence dme-miR-1011-3p

• Accession: MIMAT0005024
• Previous IDs: dme-miR-1011
• Sequence: 32 - uuauugguucaaaucgcucgcag - 54
• Deep sequencing: 168 reads, 29 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS0000481AC3_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1011
  • microrna.org:dme-miR-1011-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).