Stem-loop sequence dme-mir-1008

Accession

MI0005869 (change log)

Description

Drosophila melanogaster miR-1008 stem-loop

Literature search

1 open access papers mention dme-mir-1008
(4 sentences)

Stem-loop

   --        cu       -a     g c 
5'   guaaauau  aaaguug  acuug c a
     ||||||||  |||||||  ||||| |  
3'   cauuugug  uuucgac  ugaac g a
   ga        uu       ac     g u 

Deep sequencing

5932 reads, 163 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 10885533-10885589 [+]
• Overlapping transcripts:

  sense

  FBtr0089728 ; CG18004-RA; intron 1

  FBtr0089727 ; CG18004-RC; 3'UTR (exon 1)

  FBtr0089729 ; CG18004-RB; intron 2

Database links

• RNAcentral:URS00007A36E4_7227
• miRBase Tracker:MI0005869

Mature sequence dme-miR-1008-5p

• Accession: MIMAT0032028
• Sequence: 1 - guaaauaucuaaaguugaacu - 21
• Deep sequencing: 456 reads, 36 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076B9D5_7227

Mature sequence dme-miR-1008-3p

• Accession: MIMAT0005021
• Previous IDs: dme-miR-1008
• Sequence: 36 - ucacagcuuuuuguguuuaca - 56
• Deep sequencing: 5475 reads, 42 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00002768FA_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1008
  • microrna.org:dme-miR-1008-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).