Stem-loop sequence dme-mir-1007

Accession

MI0005868 (change log)

Description

Drosophila melanogaster miR-1007 stem-loop

Literature search

2 open access papers mention dme-mir-1007
(2 sentences)

Stem-loop

   --         -gu    a  cg   uu -   c 
5'   guaagcagu   uuga cu  auc  g guu u
     |||||||||   |||| ||  |||  | |||  
3'   cguuuguca   aacu ga  uag  c cag u
   ga         auu    c  -a   uu u   g 

Deep sequencing

1048 reads, 0 reads per million, 47 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 21296385-21296449 [-]
• Overlapping transcripts:

  sense

  FBtr0332488 ; CG1718-RC; intron 5

  FBtr0332489 ; CG1718-RD; intron 6

  FBtr0306679 ; CG1718-RB; intron 7

Clustered miRNAs

< 10kb from dme-mir-1007

• dme-mir-2535b: chrX: 21298275-21298345 [-]
• dme-mir-1007: chrX: 21296385-21296449 [-]

Database links

• RNAcentral:URS00000DC466_7227
• miRBase Tracker:MI0005868

Mature sequence dme-miR-1007-5p

• Accession: MIMAT0020904
• Sequence: 5 - gcaguguuugaacucgaucuugg - 27
• Deep sequencing: 386 reads, 32 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001F2A5D_7227

Mature sequence dme-miR-1007-3p

• Accession: MIMAT0005020
• Previous IDs: dme-miR-1007
• Sequence: 43 - uaagcucaauuaacuguuugca - 64
• Deep sequencing: 621 reads, 46 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00004B94B5_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1007
  • microrna.org:dme-miR-1007-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).