miRBase entry: dme-mir-1006

Stem-loop dme-mir-1006


Accession
MI0005867
Description
Drosophila melanogaster dme-mir-1006 precursor miRNA
Gene family
MIPF0000873; mir-1006

Literature search
1 open access papers mention dme-mir-1006
(1 sentences)

Sequence

3920 reads, 253 reads per million, 49 experiments
gUGAGUUUGAAAUUGAAAUGCGUAAAuuguuugguacaauuUAAAUUCGAUUUCUUAUUCAUAG
((((((..(((((((((.....((((((((.....))))))))..)))))))))..))))))..

Structure
--      UU         AUGCG        u 
  gUGAGU  GAAAUUGAA     UAAAuugu u
  ||||||  |||||||||     |||||||| g
  UACUUA  CUUUAGCUU     AUuuaaca g
GA      UU         ---AA        u 


Annotation confidence High
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Genome context
chr2L: 16724795-16724858 [-]

Database links

Mature dme-miR-1006-3p

Accession MIMAT0005019
Description Drosophila melanogaster dme-miR-1006-3p mature miRNA
Sequence 42 - UAAAUUCGAUUUCUUAUUCAUAG - 64
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-1006-5p

Accession MIMAT0020903
Description Drosophila melanogaster dme-miR-1006-5p mature miRNA
Sequence 2 - UGAGUUUGAAAUUGAAAUGCGUAAA - 26
Evidence not_experimental
Database links

References

  1. PubMed ID: 17589500
    Intronic microRNA precursors that bypass Drosha processing
    "Ruby JG, Jan CH, Bartel DP"
    "Nature (2007) 448:83-86