Stem-loop sequence dme-mir-1006

Accession

MI0005867 (change log)

Description

Drosophila melanogaster miR-1006 stem-loop

Gene family

MIPF0000873; mir-1006

Literature search

1 open access papers mention dme-mir-1006
(1 sentences)

Stem-loop

   --      uu         augcg        u 
5'   gugagu  gaaauugaa     uaaauugu u
     ||||||  |||||||||     |||||||| g
3'   uacuua  cuuuagcuu     auuuaaca g
   ga      uu         ---aa        u 

Deep sequencing

4394 reads, 36.7 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2L: 16724795-16724858 [-]
• Overlapping transcripts:

  sense

  FBtr0080940 ; VhaSFD-RA; intron 3

  FBtr0080942 ; VhaSFD-RD; intron 3

  FBtr0080941 ; VhaSFD-RB; intron 4

Database links

• RNAcentral:URS00002C4896_7227
• miRBase Tracker:MI0005867

Mature sequence dme-miR-1006-5p

• Accession: MIMAT0020903
• Sequence: 2 - ugaguuugaaauugaaaugcguaaa - 26
• Deep sequencing: 261 reads, 41 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000016C252_7227

Mature sequence dme-miR-1006-3p

• Accession: MIMAT0005019
• Previous IDs: dme-miR-1006
• Sequence: 42 - uaaauucgauuucuuauucauag - 64
• Deep sequencing: 4124 reads, 49 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00002E6F91_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1006
  • microrna.org:dme-miR-1006-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).