Stem-loop sequence dme-mir-1004

Accession

MI0005865 (change log)

Description

Drosophila melanogaster miR-1004 stem-loop

Stem-loop

   -gu       cau    c c     -c  --   u 
5'    uggggga   ugau u ggaga  gg  cgg u
      |||||||   |||| | |||||  ||  ||| u
3'    acucccu   acua a ucucu  cc  guc a
   gac       -uc    c c     ua  ua   a 

Deep sequencing

5915 reads, 52.4 reads per million, 42 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2L: 3767621-3767688 [+]
• Overlapping transcripts:

  sense

  FBtr0321309 ; CG43707-RH; intron 4

  FBtr0321305 ; CG43707-RC; intron 11

  FBtr0321304 ; CG43707-RD; intron 16

  FBtr0321307 ; CG43707-RF; intron 16

  FBtr0330223 ; CG43707-RI; intron 16

  FBtr0321308 ; CG43707-RG; intron 17

  FBtr0321306 ; CG43707-RE; intron 18

Database links

• RNAcentral:URS000017513E_7227
• miRBase Tracker:MI0005865

Mature sequence dme-miR-1004-5p

• Accession: MIMAT0032027
• Sequence: 1 - guugggggacauugaucucggag - 23
• Deep sequencing: 4168 reads, 33 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007863B1_7227

Mature sequence dme-miR-1004-3p

• Accession: MIMAT0005017
• Previous IDs: dme-miR-1004
• Sequence: 47 - ucucacaucacuucccucacag - 68
• Deep sequencing: 1739 reads, 32 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00001A1F28_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1004
  • microrna.org:dme-miR-1004-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).