miRBase entry: dme-mir-1004

Stem-loop dme-mir-1004


Accession
MI0005865
Description
Drosophila melanogaster dme-mir-1004 precursor miRNA


Sequence

3774 reads, 160 reads per million, 35 experiments
GUUGGGGGACAUUGAUCUCGGAGacggcgguuuaacugauccauucUCUCACAUCACUUCCCUCACAG
..(((((((...((((...(((((..(.((((.....)))))..)))))...))))..)))))))...

Structure
-GU       CAU    CUC     cg c    u 
   UGGGGGA   UGAU   GGAGa  g gguu a
   |||||||   ||||   |||||  | |||| a
   ACUCCCU   ACUA   UCUcu  c cuag c
GAC       -UC    CAC     ua -    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2L: 3767621-3767688 [+]

Database links

Mature dme-miR-1004-3p

Accession MIMAT0005017
Description Drosophila melanogaster dme-miR-1004-3p mature miRNA
Sequence 47 - UCUCACAUCACUUCCCUCACAG - 68
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-1004-5p

Accession MIMAT0032027
Description Drosophila melanogaster dme-miR-1004-5p mature miRNA
Sequence 1 - GUUGGGGGACAUUGAUCUCGGAG - 23
Evidence not_experimental
Database links

References

  1. PubMed ID: 17589500
    Intronic microRNA precursors that bypass Drosha processing
    "Ruby JG, Jan CH, Bartel DP"
    "Nature (2007) 448:83-86