Stem-loop sequence dme-mir-1003

Accession

MI0005864 (change log)

Description

Drosophila melanogaster miR-1003 stem-loop

Gene family

MIPF0000923; mir-1003

Literature search

2 open access papers mention dme-mir-1003
(4 sentences)

Stem-loop

   --        c         uu  cu u 
5'   guggguau uggaugugg  gg  c g
     |||||||| |||||||||  ||  |  
3'   cacuuaua auuuacacu  cc  g g
   ga        c         cu  ug c 

Deep sequencing

15721 reads, 516 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 24658605-24658660 [+]
• Overlapping transcripts:

  sense

  FBtr0089915 ; CG6695-RB; intron 5

  FBtr0089916 ; CG6695-RA; intron 5

Database links

• RNAcentral:URS00007B747B_7227
• miRBase Tracker:MI0005864

Mature sequence dme-miR-1003-5p

• Accession: MIMAT0020902
• Sequence: 2 - uggguaucuggaugugguugg - 22
• Deep sequencing: 1001 reads, 46 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000176EAF_7227

Mature sequence dme-miR-1003-3p

• Accession: MIMAT0005016
• Previous IDs: dme-miR-1003
• Sequence: 35 - ucucacauuuacauauucacag - 56
• Deep sequencing: 14718 reads, 49 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00001E34B6_7227
• Predicted targets:
  • TargetScanFly:dme-miR-1003
  • microrna.org:dme-miR-1003-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).