Stem-loop sequence dme-mir-252

Accession

MI0005858 (change log)

Description

Drosophila melanogaster miR-252 stem-loop

Gene family

MIPF0000285; mir-252

Literature search

8 open access papers mention dme-mir-252
(140 sentences)

Stem-loop

   accaa  u      cc        a u  c       uuag   -  u 
5'      gu cgcuuu  uaaguacu g gc gcaggag    guu cg g
        || ||||||  |||||||| | || |||||||    ||| ||  
3'      cg gcgaaa  auucguga c cg cguccuc    uaa gc u
   -ugag  -      uu        a c  u       --ca   c  c 

Deep sequencing

260216 reads, 7.43e+03 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 13464219-13464311 [-]
• Overlapping transcripts:

  sense

  FBtr0309273 ; CR17025-RB; intron 1

Database links

• RNAcentral:URS00007B408B_7227
• miRBase Tracker:MI0005858

Mature sequence dme-miR-252-5p

• Accession: MIMAT0005516
• Previous IDs: dme-miR-252
• Sequence: 16 - cuaaguacuagugccgcaggag - 37
• Deep sequencing: 255486 reads, 49 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS00000163C0_7227
• Predicted targets:
  • TargetScanFly:dme-miR-252
  • microrna.org:dme-miR-252-5p

Mature sequence dme-miR-252-3p

• Accession: MIMAT0020896
• Sequence: 60 - uccugcugcccaagugcuuauu - 81
• Deep sequencing: 4603 reads, 37 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00005EED91_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).