miRBase entry: dme-mir-252

Stem-loop dme-mir-252


Accession
MI0005858
Description
Drosophila melanogaster dme-mir-252 precursor miRNA
Gene family
MIPF0000285; mir-252

Literature search
8 open access papers mention dme-mir-252
(144 sentences)

Sequence

215107 reads, 7388 reads per million, 49 experiments
accaaguucgcuuucCUAAGUACUAGUGCCGCAGGAGuuagguucguguccgcaauaccUCCUGCUGCCCAAGUGCUUAUUaaagcggcgagu
.......(((((((..((((((((.(.((.(((((((....(((((....)).)))..))))))).)).).))))))))..))))))).....

Structure
accaagu       cC        A U  C       uuag   -  u 
       ucgcuuu  UAAGUACU G GC GCAGGAG    guu cg g
       |||||||  |||||||| | || |||||||    ||| ||  
       ggcgaaa  AUUCGUGA C CG CGUCCUc    uaa gc u
--ugagc       UU        A C  U       --ca   c  c 


Annotation confidence High
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Genome context
chr3R: 13464219-13464311 [-]

Database links

Mature dme-miR-252-5p

Accession MIMAT0005516
Description Drosophila melanogaster dme-miR-252-5p mature miRNA
Sequence 16 - CUAAGUACUAGUGCCGCAGGAG - 37
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-252-3p

Accession MIMAT0020896
Description Drosophila melanogaster dme-miR-252-3p mature miRNA
Sequence 60 - UCCUGCUGCCCAAGUGCUUAUU - 81
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879