miRBase entry: dme-mir-994

Stem-loop dme-mir-994


Accession
MI0005855
Description
Drosophila melanogaster dme-mir-994 precursor miRNA
Gene family
MIPF0001045; mir-994

Literature search
2 open access papers mention dme-mir-994
(2 sentences)

Sequence

451554 reads, 3809 reads per million, 46 experiments
uaucgaguuauCUAAGGAAAUAGUAGCCGUGAUuuuacccaagaauuuuucacauauCACAGUUGCUGUUUCUUUUAGAUagcucuuuugu
....(((((((((((((((((((((((.(((((......................))))).))))))))))).))))))))))))......

Structure
--uauc            -           C     uuuacccaag 
      gaguuauCUAAG GAAAUAGUAGC GUGAU          a
      |||||||||||| ||||||||||| |||||           
      cucgaUAGAUUU CUUUGUCGUUG CACua          a
uguuuu            U           A     uacacuuuuu 


Annotation confidence High
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Genome context
chr3R: 10408137-10408227 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-994
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-994-5p

Accession MIMAT0005513
Description Drosophila melanogaster dme-miR-994-5p mature miRNA
Sequence 12 - CUAAGGAAAUAGUAGCCGUGAU - 33
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-994-3p

Accession MIMAT0020894
Description Drosophila melanogaster dme-miR-994-3p mature miRNA
Sequence 58 - CACAGUUGCUGUUUCUUUUAGAU - 80
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879