Stem-loop sequence dme-mir-989

Accession

MI0005848 (change log)

Description

Drosophila melanogaster miR-989 stem-loop

Gene family

MIPF0000885; mir-989

Literature search

8 open access papers mention dme-mir-989
(114 sentences)

Stem-loop

   aaa     ug  a  cgg       c ug  g        ----------- g       a    -   c       -   auu   -ua   g 
5'    gauuu  gg au   ccacuac u  ca ucacguga           u aaaagac cagg uga acugauc cgg   ugg   guu a
      |||||  || ||   ||||||| |  || ||||||||           | ||||||| |||| ||| ||||||| |||   |||   |||  
3'    uuaaa  cc ua   ggugaug a  gu aguguacu           a uuuucug guuu acu ugauuag gcc   acc   uaa c
   aca     gu  a  caa       c gu  -        ugauaagcuua g       c    u   u       a   -gu   ucc   a 

Deep sequencing

2757600 reads, 1.35e+04 reads per million, 46 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 14145351-14145524 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000078D439_7227
• miRBase Tracker:MI0005848

Mature sequence dme-miR-989-5p

• Accession: MIMAT0020887
• Sequence: 17 - ggccacuaccuugcagucacgug - 39
• Deep sequencing: 618 reads, 34 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000010B87A_7227

Mature sequence dme-miR-989-3p

• Accession: MIMAT0005506
• Previous IDs: dme-miR-989
• Sequence: 139 - ugugaugugacguaguggaac - 159
• Deep sequencing: 2756867 reads, 46 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000052DA91_7227
• Predicted targets:
  • TargetScanFly:dme-miR-989
  • microrna.org:dme-miR-989-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).