Stem-loop sequence dme-mir-983-2

Accession

MI0005841 (change log)

Description

Drosophila melanogaster miR-983-2 stem-loop

Gene family

MIPF0000450; mir-983

Literature search

4 open access papers mention dme-mir-983-2
(14 sentences)

Stem-loop

   ---uauuaua            a     a   uu gaa       uuuuc 
5'           uugcaauaauua auaau cgu  c   cuaauga     a
             |||||||||||| ||||| |||  |   |||||||      
3'           aauguuguugau uauua gca  g   gauuacu     g
   ucaacuuaca            c     c   uu aug       uacuu 

Deep sequencing

1955 reads, 66.7 reads per million, 48 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 4368483-4368581 [-]
• Overlapping transcripts:

  antisense

  FBtr0070652 ; CG3626-RA; intron 1

Clustered miRNAs

< 10kb from dme-mir-983-2

• dme-mir-984: chrX: 4368646-4368735 [-]
• dme-mir-983-2: chrX: 4368483-4368581 [-]
• dme-mir-983-1: chrX: 4368309-4368399 [-]
• dme-mir-303: chrX: 4366179-4366248 [-]
• dme-mir-982: chrX: 4365806-4365898 [-]

Database links

• RNAcentral:URS000052AC75_7227
• miRBase Tracker:MI0005841

Mature sequence dme-miR-983-5p

• Accession: MIMAT0005499
• Previous IDs: dme-miR-983
• Sequence: 21 - auaauacguuucgaacuaauga - 42
• Deep sequencing: 2888 reads, 44 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS0000261223_7227
• Predicted targets:
  • TargetScanFly:dme-miR-983
  • microrna.org:dme-miR-983-5p

Mature sequence dme-miR-983-3p

• Accession: MIMAT0020880
• Sequence: 57 - auuagguaguuacgcauuaucu - 78
• Deep sequencing: 972 reads, 31 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000580B78_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).