Stem-loop sequence dme-mir-982

Accession

MI0005839 (change log)

Description

Drosophila melanogaster miR-982 stem-loop

Gene family

MIPF0000843; mir-982

Literature search

4 open access papers mention dme-mir-982
(39 sentences)

Stem-loop

   ----c        g    a  cu   ca     g      --au   uu 
5'      gaaaucau uuag uc  gga  aauau aaguaa    ugu  u
        |||||||| |||| ||  |||  ||||| ||||||    |||   
3'      uuuuggua aauc ag  ccu  uuaua uucauu    acg  u
   cgaga        -    a  uu   ac     g      aacu   ua 

Deep sequencing

1519 reads, 55.3 reads per million, 47 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 4365806-4365898 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dme-mir-982

• dme-mir-984: chrX: 4368646-4368735 [-]
• dme-mir-983-2: chrX: 4368483-4368581 [-]
• dme-mir-983-1: chrX: 4368309-4368399 [-]
• dme-mir-303: chrX: 4366179-4366248 [-]
• dme-mir-982: chrX: 4365806-4365898 [-]

Database links

• RNAcentral:URS00002AB4E7_7227
• miRBase Tracker:MI0005839

Mature sequence dme-miR-982-5p

• Accession: MIMAT0005498
• Previous IDs: dme-miR-982
• Sequence: 16 - uccuggacaaauaugaaguaaau - 38
• Deep sequencing: 1435 reads, 47 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00005D1F2D_7227
• Predicted targets:
  • TargetScanFly:dme-miR-982
  • microrna.org:dme-miR-982-5p

Mature sequence dme-miR-982-3p

• Accession: MIMAT0020879
• Sequence: 55 - uuacuugauauucauccuugaa - 76
• Deep sequencing: 84 reads, 18 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000314C0C_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).