Stem-loop sequence dme-mir-981

Accession

MI0005838 (change log)

Description

Drosophila melanogaster miR-981 stem-loop

Gene family

MIPF0000710; mir-981

Literature search

5 open access papers mention dme-mir-981
(5 sentences)

Stem-loop

   aaaca   u   u aagu          ua          -   uuaa 
5'      ucc cac g    cggguuucgu  gcagcgggcu guu    u
        ||| ||| |    ||||||||||  |||||||||| |||    a
3'      agg gug c    guccaaagca  uguugcuuga caa    a
   -uaaa   u   u guac          gc          a   cuua 

Deep sequencing

88386 reads, 1.91e+03 reads per million, 48 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chrX: 1788861-1788957 [-]
• Overlapping transcripts:

  antisense

  FBtr0309966 ; CG42666-RG; intron 2

Database links

• RNAcentral:URS00001CE1F1_7227
• miRBase Tracker:MI0005838

Mature sequence dme-miR-981-5p

• Accession: MIMAT0020878
• Sequence: 19 - cggguuucguuagcagcgggcu - 40
• Deep sequencing: 2525 reads, 39 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001BA2B3_7227

Mature sequence dme-miR-981-3p

• Accession: MIMAT0005497
• Previous IDs: dme-miR-981
• Sequence: 61 - uucguugucgacgaaaccugca - 82
• Deep sequencing: 85861 reads, 48 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS00003674BD_7227
• Predicted targets:
  • TargetScanFly:dme-miR-981
  • microrna.org:dme-miR-981-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).