miRBase entry: dme-mir-977

Stem-loop dme-mir-977


Accession
MI0005834
Description
Drosophila melanogaster dme-mir-977 precursor miRNA
Gene family
MIPF0000931; mir-977

Literature search
1 open access papers mention dme-mir-977
(79 sentences)

Sequence

5670 reads, 1473 reads per million, 30 experiments
cgaaucaacaaacaagguaugcuuUAGAUAACUCGAAUAUCACAUCuucaguguucgaaaucugaUGAGAUAUUCACGUUGUCUAAaucauguuuugua
...........((((((((((.((((((((((..(((((((.((((.................)))).)))))))..)))))))))).)))))))))).

Structure
cgaaucaacaa          c          UC       A    uucagug 
           acaagguaug uuUAGAUAAC  GAAUAUC CAUC       u
           |||||||||| ||||||||||  ||||||| ||||       u
           uguuuuguac aAAUCUGUUG  CUUAUAG GUag       c
----------a          u          CA       A    ucuaaag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chrX: 19559022-19559120 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from dme-mir-977
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-977-3p

Accession MIMAT0005493
Description Drosophila melanogaster dme-miR-977-3p mature miRNA
Sequence 66 - UGAGAUAUUCACGUUGUCUAA - 86
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-977-5p

Accession MIMAT0020874
Description Drosophila melanogaster dme-miR-977-5p mature miRNA
Sequence 25 - UAGAUAACUCGAAUAUCACAUC - 46
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879