miRBase entry: dme-mir-970

Stem-loop dme-mir-970


Accession
MI0005827
Description
Drosophila melanogaster dme-mir-970 precursor miRNA
Gene family
MIPF0000700; mir-970

Literature search
6 open access papers mention dme-mir-970
(14 sentences)

Sequence

86296 reads, 1258 reads per million, 49 experiments
gaaaggcaucuguugcAGCUAGCGGGUGUUUUAUUUGGUAgcuguaaugauuugaaucuaUCAUAAGACACACGCGGCUAUaaccguugucuaag
...(((((.(.((((.((((.(((.((((((((..((((((...(((....)))...)))))))))))))).))))))).)))).).)))))...

Structure
gaa     u u    c    A   G        UU      cug   u 
   aggca c guug AGCU GCG GUGUUUUA  UGGUAg   uaa g
   ||||| | |||| |||| ||| ||||||||  ||||||   |||  
   ucugu g caaU UCGG CGC CACAGAAU  ACUauc   guu a
gaa     u c    A    -   A        --      uaa   u 


Annotation confidence High
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Genome context
chrX: 12636336-12636430 [+]

Database links

Mature dme-miR-970-3p

Accession MIMAT0005486
Description Drosophila melanogaster dme-miR-970-3p mature miRNA
Sequence 61 - UCAUAAGACACACGCGGCUAU - 81
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-970-5p

Accession MIMAT0020867
Description Drosophila melanogaster dme-miR-970-5p mature miRNA
Sequence 17 - AGCUAGCGGGUGUUUUAUUUGGUA - 40
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879