Stem-loop sequence dme-mir-957

Accession

MI0005811 (change log)

Description

Drosophila melanogaster miR-957 stem-loop

Gene family

MIPF0000723; mir-957

Literature search

2 open access papers mention dme-mir-957
(2 sentences)

Stem-loop

   -u   -    aua a          c    u    ug  gugcug    gu 
5'   guc caca   g ccuuaguuuu gacg guuu  gu      ggga  u
     ||| ||||   | |||||||||| |||| ||||  ||      ||||   
3'   cgg gugu   c ggagucaaaa cugc caaa  ua      ccuu  c
   cg   a    caa c          c    -    gu  -----g    au 

Deep sequencing

499331 reads, 4.31e+03 reads per million, 42 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3L: 22518196-22518291 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00003A5F59_7227
• miRBase Tracker:MI0005811

Mature sequence dme-miR-957-5p

• Accession: MIMAT0020851
• Sequence: 15 - cuuaguuuucgacguguuuuggu - 37
• Deep sequencing: 259 reads, 27 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000059B56D_7227

Mature sequence dme-miR-957-3p

• Accession: MIMAT0005470
• Previous IDs: dme-miR-957
• Sequence: 61 - ugaaaccguccaaaacugaggc - 82
• Deep sequencing: 499058 reads, 42 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS000032E183_7227
• Predicted targets:
  • TargetScanFly:dme-miR-957
  • microrna.org:dme-miR-957-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).