Stem-loop dme-mir-193

Accession

MI0005809

Description

Drosophila melanogaster dme-mir-193 precursor miRNA

Gene family

MIPF0000082; mir-193

Literature search

7 open access papers mention dme-mir-193
(11 sentences)

Sequence

21257 reads, 1103 reads per million, 48 experiments

ugugugcccuuauuauggUUGGGAUUUUUUAGAUCAGCAGuuauugcuauauagccauauuuauaaaucuucUACUGGCCUACUAAGUCCCAACauaaugagaguaaa
....(((.(((((((((.(((((((((..(((...((((.....)))).....((((..................)))))))..)))))))))))))))))).)))..

Structure

ugug   c         g         UU   AUCAGCAGuuauugcuauaua    uauuuaua 
    ugc cuuauuaug UUGGGAUUU  UAG                     gcca        a
    ||| ||||||||| |||||||||  |||                     ||||         
    aug gaguaauaC AACCCUGAA  AUC                     CGGU        a
--aa   a         -         UC   ---------------------    CAUcuucu 

Annotation confidence High

Genome context

chr3L: 21574014-21574121 [+]

Mature dme-miR-193-3p

• Accession: MIMAT0005468
• Description: Drosophila melanogaster dme-miR-193-3p mature miRNA
• Sequence: 73 - UACUGGCCUACUAAGUCCCAAC - 94
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-193-5p

• Accession: MIMAT0020849
• Description: Drosophila melanogaster dme-miR-193-5p mature miRNA
• Sequence: 19 - UUGGGAUUUUUUAGAUCAGCAG - 40
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879