miRBase entry: dme-mir-955

Stem-loop dme-mir-955


Accession
MI0005807
Description
Drosophila melanogaster dme-mir-955 precursor miRNA
Gene family
MIPF0000989; mir-955


Sequence

739 reads, 29 reads per million, 39 experiments
ggccagcuaaucaacucCAUCGUGCAGAGGUUUGAGUGUCcuguguuuugccuaaucgCAUUCAAUUUCUGAACGGUAGAgaugguacgcuuagaaa
....(((..((((.(((.(((((.((((((((.((((((..................)))))))))))))).))))).))).))))..)))......

Structure
--ggcc   ua    a   C     G        U      Ccuguguu 
      agc  auca cuc AUCGU CAGAGGUU GAGUGU        u
      |||  |||| ||| ||||| |||||||| ||||||         
      ucg  uggu gAG UGGCA GUCUUUAA CUUACg        u
aaagau   ca    a   A     A        -      cuaauccg 


Annotation confidence Not enough data
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Genome context
chr3L: 3299055-3299151 [+]

Database links

Mature dme-miR-955-5p

Accession MIMAT0005466
Description Drosophila melanogaster dme-miR-955-5p mature miRNA
Sequence 18 - CAUCGUGCAGAGGUUUGAGUGUC - 40
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-955-3p

Accession MIMAT0020847
Description Drosophila melanogaster dme-miR-955-3p mature miRNA
Sequence 59 - CAUUCAAUUUCUGAACGGUAGA - 80
Evidence not_experimental

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864