miRBase entry: dme-mir-954

Stem-loop dme-mir-954


Accession
MI0005806
Description
Drosophila melanogaster dme-mir-954 precursor miRNA

Literature search
2 open access papers mention dme-mir-954
(2 sentences)

Sequence

1878 reads, 143 reads per million, 49 experiments
uacaaacacaagauuuUCUGGGUGUUGCGUUGUGUGUaccuguguacaggcguaUUCACAUGCAACAUCCCUUACaucuugcuugau
........((((((.....(((((((((((.(((.(((((((....))))..))).)))))))))))))).....))))))......

Structure
uacaaaca      uuUCU           U   U   --    u 
        caagau     GGGUGUUGCGU GUG GUa  ccug g
        ||||||     ||||||||||| ||| |||  ||||  
        guucua     CCUACAACGUA CAC Uau  ggac u
--uaguuc      CAUUC           -   U   gc    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 626126-626212 [+]

Database links

Mature dme-miR-954-5p

Accession MIMAT0005465
Description Drosophila melanogaster dme-miR-954-5p mature miRNA
Sequence 17 - UCUGGGUGUUGCGUUGUGUGU - 37
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dme-miR-954-3p

Accession MIMAT0020846
Description Drosophila melanogaster dme-miR-954-3p mature miRNA
Sequence 55 - UUCACAUGCAACAUCCCUUAC - 75
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864